PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 164aa    MW: 19827.8 Da    PI: 9.5404
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.13.2e-27151215127
                     NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                             ++F P++++l+ ++Lk k++g+      +i+e+++yk+ePwdLp              ++++ky+t++r+nr+t++gyW++t k+ +
  RcHm_v2.0_Chr1g0361721  15 MKFFPSEDQLI-KFLKMKIDGRYSG---FISEINLYKHEPWDLP--------------ENSRKYKTSDRSNRQTEKGYWHETSKEVP 83 
                             79*********.9********9954...5**************9..............3578999********************** PP

                     NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                             v+++  k++++g k+ Lvfykgra++ ekt+Wvm+ey 
  RcHm_v2.0_Chr1g0361721  84 VVNTndKSKVIGRKRFLVFYKGRASRKEKTNWVMQEYF 121
                             **99777888***************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MKMDRGTYII VKEDMKFFPS EDQLIKFLKM KIDGRYSGFI SEINLYKHEP WDLPENSRKY  60
KTSDRSNRQT EKGYWHETSK EVPVVNTNDK SKVIGRKRFL VFYKGRASRK EKTNWVMQEY  120
FVPEGEHEVV YHTYILYEFW NINISVHQVD HFIIKVVLLH VIID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.18e-26NAC family protein