PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0361731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 316aa    MW: 36221.5 Da    PI: 5.0599
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0361731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.51.3e-23131152128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                             p Gf+F+P++e lv++yL+kk+          ++e+d++++eP++Lp    +++kew+fF +         r +r tk+gyWk+tg 
  RcHm_v2.0_Chr1g0361731  13 PEGFKFQPSEERLVNHYLRKKLL---------FPEIDLCQYEPHELP----ESNKEWFFFNRG--------RGRR-TKQGYWKKTGC 77 
                             89*****************9975.........567899********9....45789**99874........4455.789******** PP

                     NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +++ +++++ +g  + ++f+   +pkg+ t Wv+hey+l
  RcHm_v2.0_Chr1g0361731  78 GRKIRASDKSIIGELRHMTFH--CSPKGQVTAWVIHEYSL 115
                             *********************..89*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MKGTEMTATL TFPEGFKFQP SEERLVNHYL RKKLLFPEID LCQYEPHELP ESNKEWFFFN  60
RGRGRRTKQG YWKKTGCGRK IRASDKSIIG ELRHMTFHCS PKGQVTAWVI HEYSLLPDQG  120
DIVLSRLKLK SVDDTGITSD DLDMEDVPEL LDQPEVNLDS LFPPLEPQQE CRPDVRQSPL  180
STELGNDPNT NVYYSECSKW QCALGTDDSY LRHLKRISTN DHEKPVRHAM AKFQNRATAR  240
TILEVHPQTE DSAELGDALH YNECSELQSP FVDNDSSLTE FLNTCIADED YYSSEESALI  300
PSKDSNLATK VIRKGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-23NAC family protein