PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0362171

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 385aa MW: 42008.4 Da PI: 6.6717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0362171	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H RcHm_v2.0_Chr1g0362171 175 YECKTCNRTFPSFQALGGHRASH 197 99**********99999998887 PP
2	zf-C2H2	12.9	0.00033	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H RcHm_v2.0_Chr1g0362171 263 HECSICGAEFTSGQALGGHMRRH 285 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MSQQVEEERE QPNMEEADHQ EEEVIIGCNE QHNNNNTATT TTNNNIIIKG KRTKRLRPQS 60 PIPFAIPTNS STADGGGQGG GGGECNNTTN SSPTTSTEFQ DSTEEEEDMA NCLILLAQGQ 120 SRGPSSSPKL PQAHNDHNAT TTTSRRFLEA TPLAAAVGPA KMEGPAAAAG GYYVYECKTC 180 NRTFPSFQAL GGHRASHKKP KAAINVDDKK QFGIGLLPSD EEDTQLFKNM NMNNNTASSS 240 PLSLHLSNRG LVLSTNNNKS KVHECSICGA EFTSGQALGG HMRRHRAPVG GPATLALTAP 300 PPTVPLALEA PQPQQNQHQQ QPLKKQRSML SLDLDLNLPA PEDDHHHRDQ SKFLFAPKQQ 360 QQQQPQQPPQ QQQQERLRIL VDCHY

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MSQQVEEERE QPNMEEADHQ EEEVIIGCNE QHNNNNTATT TTNNNIIIKG KRTKRLRPQS  60
PIPFAIPTNS STADGGGQGG GGGECNNTTN SSPTTSTEFQ DSTEEEEDMA NCLILLAQGQ  120
SRGPSSSPKL PQAHNDHNAT TTTSRRFLEA TPLAAAVGPA KMEGPAAAAG GYYVYECKTC  180
NRTFPSFQAL GGHRASHKKP KAAINVDDKK QFGIGLLPSD EEDTQLFKNM NMNNNTASSS  240
PLSLHLSNRG LVLSTNNNKS KVHECSICGA EFTSGQALGG HMRRHRAPVG GPATLALTAP  300
PPTVPLALEA PQPQQNQHQQ QPLKKQRSML SLDLDLNLPA PEDDHHHRDQ SKFLFAPKQQ  360
QQQQPQQPPQ QQQQERLRIL VDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	7e-56	C2H2 family protein