PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0363221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 347aa    MW: 37725.3 Da    PI: 5.93
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0363221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17255288134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  RcHm_v2.0_Chr1g0363221 255 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 288
                             99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MITPNFVDEI DCGSFFDNID DLMEDVDSVL GPAPDCNSAF PSSLSLWDGH SSAAAPLPPP  60
DAAVFSGNGD SDFSSELPVP YEEMVHLEWL SNFVENSEYS GGNLTINKQQ ESSLVNKESS  120
HQQFQTSSPI SVLDSSSSCS GEKNVLEGSI APGRRGRARS KRPRPATFNP RSAIQLISPA  180
SSVSEIDNPL QQHSLFAPKV FSDSENFAES RPVVKMPKQA SGEQKKKKRI KLPPPPKVPG  240
ELNEDTPVQG SVRKCLHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT  300
FVPALHSNSH KKVIEMRTKG GEMAAVPDNS IPELIPNNNS SISLDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRPRP
2225232KKKKRIKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-43GATA family protein