PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0364081
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 226aa    MW: 24612.9 Da    PI: 7.686
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0364081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-42571561100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrr+C++ Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+
  RcHm_v2.0_Chr1g0364081  57 PCAACKILRRRCVERCVLAPYFPPSDPIKFTTAHRVFGASNIIKFLQDLPESQRADAVSSMVYEANARLRDPVYGCAGAIFSLQKQV 143
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                              +l+++la++++e
  RcHm_v2.0_Chr1g0364081 144 TELQSQLAKAQAE 156
                             *********9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MEFNANTTAT TKTPPSSFTY SPLTSPSSSP MISSSPATSR TTSARPPLPP PPVVVSPCAA  60
CKILRRRCVE RCVLAPYFPP SDPIKFTTAH RVFGASNIIK FLQDLPESQR ADAVSSMVYE  120
ANARLRDPVY GCAGAIFSLQ KQVTELQSQL AKAQAELINM QSQQGNLVAL ICMNMSTTTA  180
TNTQQSKEAA VVPILQQQQY SNFNIDTSCF LDENNLGSAD WEPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-67LBD family protein