PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0364211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 177aa    MW: 19233.3 Da    PI: 5.0437
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0364211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.92.6e-5729125197
                   NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                             vreqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy+epl++yl
  RcHm_v2.0_Chr1g0364211  29 VREQDRYLPIANISRIMKKALPQNGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLRIYL 115
                             69************************************************************************************* PP

                   NF-YB  88 kkyrelegek 97 
                             ++yreleg+ 
  RcHm_v2.0_Chr1g0364211 116 ARYRELEGDA 125
                             *******996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MAEAPTSPAG GSHESGGEQS PQNGSSSNVR EQDRYLPIAN ISRIMKKALP QNGKIAKDAK  60
DTVQECVSEF ISFVTSEASD KCQKEKRKTI NGDDLLWAMA TLGFEDYIEP LRIYLARYRE  120
LEGDAKGSAR GGEGSAKGNP VGAMTGQNSQ FVHQPPLNYV NSQEDYYVPL NNMGNGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.12e-82NF-YB family protein