PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0365701
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 212aa    MW: 23466 Da    PI: 4.8968
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0365701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.81.1e-143191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+t+t++ql++L+el++    ++p+ e+++ +  +l    +++ ++V++WFqN +a e++
  RcHm_v2.0_Chr1g0365701 31 NRWTPTPDQLRILQELYYDraLKNPTPEQIQGICLHLkpygQIENKNVFFWFQNLKACERQ 91
                            7****************96579*********************************998885 PP
2Wus_type_Homeobox89.43.7e-292992264
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            +++RWtPtp+Q++iL+ely+ ++l++P+ e+iq i  +L+ yG+ie+kNVf+WFQN ka erqk
  RcHm_v2.0_Chr1g0365701 29 TNNRWTPTPDQLRILQELYYdRALKNPTPEQIQGICLHLKPYGQIENKNVFFWFQNLKACERQK 92
                            679***************9879*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MELQTQQPTE EGGSIQAAGS SANTPIRPTN NRWTPTPDQL RILQELYYDR ALKNPTPEQI  60
QGICLHLKPY GQIENKNVFF WFQNLKACER QKLREFRNVR VGGSLDLNFG STSSTDDGRS  120
IDLNFGSTGS TSTDRSIDLN FGLRVGYGVD GSIMEQRGKY HQEIETLPLF PMHGEDIFGN  180
MKTTSEGGSG YGGGSRISLE LSLNSYGDAD MA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-23WOX family protein