PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0366121
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 190aa    MW: 20713.5 Da    PI: 9.4756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0366121genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00164365123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C++ F++   L  H  +H
  RcHm_v2.0_Chr1g0366121 43 FECKTCNRQFPSFQALGGHRASH 65
                            89**********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MKRSITELDH SVTMANCLML LSRGNDYDSL ISTSSSSSPS RVFECKTCNR QFPSFQALGG  60
HRASHKKPRL AGGDGSSSDS QSSSPSKPKT HECNICGLEF AIGQALGGHM RRHRAAVTDN  120
NNHHQKNNGV QSNSMMGLNS NLGQVVVPVL KKTNSSRRIL CLDLNLTPFE NDMEILGIGK  180
KTPPLVEFIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-37C2H2 family protein