PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0368101
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 97aa    MW: 10759.5 Da    PI: 8.4966
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0368101genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.37.7e-36795188
                  DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                            +C aC++lrrkC+++Cv+apyf+ +q + +f +vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v+ i++lqqq+ 
  RcHm_v2.0_Chr1g0368101  7 SCGACRFLRRKCTSECVFAPYFCYDQaATHFSAVHKVFGASNVSKLLLHLPVQHRSDAALTMSYEAIARMRDPIYGCVSQIFALQQQVT 95
                            6************************9789**********************************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    
MTGLGSSCGA CRFLRRKCTS ECVFAPYFCY DQAATHFSAV HKVFGASNVS KLLLHLPVQH  60
RSDAALTMSY EAIARMRDPI YGCVSQIFAL QQQVTFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-49LBD family protein