PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0370401

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 673aa MW: 74023.1 Da PI: 7.2725

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0370401	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	268	288	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg RcHm_v2.0_Chr1g0370401 268 PCPEFRK-GSCQKGDVCEYAHG 288 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MCKGSKSRVI SSNFIMENEF QNQNGGSLYK SSVLVELSAS DNLDAFRSEV EEKGFHVDEA 60 SFWYGRGIGS KKMGFEERTP LMIAAMFGST KVLKYIIDSG KVDVNRSCGS DRVTALHCAT 120 AGGSSSSLEV VKLLLDASAD ADCVTANGNK PVDLIAPALK SPCNSRRKAM EMLLKGDMSL 180 LGSDIDDQEV PSLQLLKEGS EKKEYPIDIA LPDINNGIYG SDEFRMYTFK VKPCSRAYSH 240 DWTECPFVHP GENARRRDPR KYPYSCVPCP EFRKGSCQKG DVCEYAHGVF ESWLHPAQYR 300 TRLCKDETGC TRKVCFFAHK PEELRPVYVS TGSAMPSPRS MSASAGDMTT MSPLALGSPS 360 LSMPTASTPP MSPIAASSPK NGGLWQNKVN LTPPALQLPG SRLKSASSAR DLDLEMEFLG 420 RDNHANQQQQ QQQQHMWDEM SRLSSPSCYN NSRIGELKPT NLDDLFGSFD PSFLSQLQAL 480 STQTQLQSSP GLQSRQNMNQ LRSSYPSNLS SSPVRKPSSF GLDSPAALAA AVMNSRSAAF 540 AKRSHSFIDR GAVTHHPGFT SAANSNTMMS SSDWNSPSGK LDWGIQGDDL NKLRKSASFG 600 FRSNNAGTPN NMMPSALDEP DVSWVNSLVK DVSSERSEMF GTERQNYRQL NKGVHEMLPS 660 WAEQMYIEQE QRA

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MCKGSKSRVI SSNFIMENEF QNQNGGSLYK SSVLVELSAS DNLDAFRSEV EEKGFHVDEA  60
SFWYGRGIGS KKMGFEERTP LMIAAMFGST KVLKYIIDSG KVDVNRSCGS DRVTALHCAT  120
AGGSSSSLEV VKLLLDASAD ADCVTANGNK PVDLIAPALK SPCNSRRKAM EMLLKGDMSL  180
LGSDIDDQEV PSLQLLKEGS EKKEYPIDIA LPDINNGIYG SDEFRMYTFK VKPCSRAYSH  240
DWTECPFVHP GENARRRDPR KYPYSCVPCP EFRKGSCQKG DVCEYAHGVF ESWLHPAQYR  300
TRLCKDETGC TRKVCFFAHK PEELRPVYVS TGSAMPSPRS MSASAGDMTT MSPLALGSPS  360
LSMPTASTPP MSPIAASSPK NGGLWQNKVN LTPPALQLPG SRLKSASSAR DLDLEMEFLG  420
RDNHANQQQQ QQQQHMWDEM SRLSSPSCYN NSRIGELKPT NLDDLFGSFD PSFLSQLQAL  480
STQTQLQSSP GLQSRQNMNQ LRSSYPSNLS SSPVRKPSSF GLDSPAALAA AVMNSRSAAF  540
AKRSHSFIDR GAVTHHPGFT SAANSNTMMS SSDWNSPSGK LDWGIQGDDL NKLRKSASFG  600
FRSNNAGTPN NMMPSALDEP DVSWVNSLVK DVSSERSEMF GTERQNYRQL NKGVHEMLPS  660
WAEQMYIEQE QRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein