PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0370561
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 264aa    MW: 29366.7 Da    PI: 9.8847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0370561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-1273119354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+++E+rRRdriN  +++Lr+l+P++      K++Ka+ L  +++ +k+L
  RcHm_v2.0_Chr1g0370561  73 KSHSQAEKRRRDRINAQLATLRKLIPQS-----DKMDKAALLGSVIDEVKDL 119
                             79*************************8.....7***********9999888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MEKCYSAEGP NWVNQHQTAT AVSNESSSFQ VPWPHVSHVS KPTQFQFSGR FPPSWSSTAE  60
GIAEEDRAAS ASKSHSQAEK RRRDRINAQL ATLRKLIPQS DKMDKAALLG SVIDEVKDLK  120
RKAIEVSKAF MVPTEFDDLT VSQCDPAREG TLINSTSINK IKDNSIMIRV SVCCDDQPEL  180
FTELIQVLKR LKLTAIKADI ASAGGRIKSI LVLCSKNSEE AVSISTLKQA LKLVLSKIAE  240
SSVTPNCRIR SKRQRFFLPF QYPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-49bHLH family protein