PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0370631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 329aa    MW: 36065.4 Da    PI: 6.1532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0370631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-1862111255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aaka+++a+  l+g
  RcHm_v2.0_Chr1g0370631  62 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAAKAYDRAAIILYG 111
                             59****999.**********954...5**********************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MDEDDTSPPH PLQRNNDNDN ETGVETTAAA TTTPTTNTTE AKDNSNNRKC KGKGGPDNNK  60
FRYRGVRQRS WGKWVAEIRE PRKRTRKWLG TFATAEDAAK AYDRAAIILY GSRAQLNLQP  120
SGSSSSQSST RGSSSSSSSS SSSQTLRPLL PRPSGFPGFS CNFAASAHPY GFVPYNSVGV  180
YPNSSAQMSN QLDNLNPQIQ QQVVVQQQFH HYPLSSDCCG DVINTTPTSY PNPSVHAHQQ  240
YQVHQQQDLN QNQSCTSYED MNSIVGSAGS SLSMSSQPMA VAPAVSDPMM MAQGGPMSPM  300
WPLTNEEECA QTLWDYYGDP FFLDFKGFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.13e-29ERF family protein