PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0370681

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 181aa MW: 19638.1 Da PI: 7.5016

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0370681	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+l+r+C++ C++ap+f +++p+kfa vhk+FGasnv+k+l+++pee+red++ssl+yeAear+rdPvyG++g i lq ++ RcHm_v2.0_Chr1g0370681 12 SCAACKLLKRRCVPTCIFAPHFRSDEPSKFAKVHKVFGASNVSKILSEVPEEQREDTVSSLAYEAEARLRDPVYGCIGAIAMLQGKM 98 6************************************************************************************ PP DUF260 88 eqlkaelallkee 100 +l+++la ++++ RcHm_v2.0_Chr1g0370681 99 VELQHDLAIARAR 111 *****999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MKGTHEPRSS SSCAACKLLK RRCVPTCIFA PHFRSDEPSK FAKVHKVFGA SNVSKILSEV 60 PEEQREDTVS SLAYEAEARL RDPVYGCIGA IAMLQGKMVE LQHDLAIARA RLACYGHPSS 120 SSVSSSSSAS SYTMLEDHLT EANFAGLPAF SGFNNAFSQS STEFMSQHGT NSGFSYPPYI 180 L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	8e-64	LBD family protein