PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0370961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 173aa    MW: 19185.8 Da    PI: 5.5396
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0370961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.81e-4481071100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +Ca+Ck+lrr+Ca+dC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar+rdPvyG+vg i+ lq+q+
  RcHm_v2.0_Chr1g0370961   8 PCASCKLLRRRCAQDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRTDAVSSLVYEANARVRDPVYGCVGAISCLQNQV 94 
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             ++l+ +la++++e
  RcHm_v2.0_Chr1g0370961  95 SELQMQLAVAQAE 107
                             ********99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MGGNGTSPCA SCKLLRRRCA QDCIFAPYFP SDDPHKFAIV HKVFGASNVS KMLQELPVHQ  60
RTDAVSSLVY EANARVRDPV YGCVGAISCL QNQVSELQMQ LAVAQAEILC IQMQQEPMVL  120
PSQQIDTCTD DERTYFLNNN LPQYLDFPSS SSSNIVIHDS LKREGIFGHD MVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-78LBD family protein