PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0370991

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 223aa MW: 24701.2 Da PI: 6.6078

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0370991	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.7	4.7e-44	64	163	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +Ca+Ck+lrr+Ca+dC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar+rdPvyG+vg i+ lq+q+ RcHm_v2.0_Chr1g0370991 64 PCASCKLLRRRCAQDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRTDAVSSLVYEANARVRDPVYGCVGAISCLQNQV 150 7************************************************************************************ PP DUF260 88 eqlkaelallkee 100 ++l+ +la +++e RcHm_v2.0_Chr1g0370991 151 SELQMQLAGAQAE 163 *****998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MLFAHTLSTT TINTPPLHSH FLQVVLVSRS QLSQSSFLVI LDLVSRPLET FLKSQIMGGN 60 GTSPCASCKL LRRRCAQDCI FAPYFPSDDP HKFAIVHKVF GASNVSKMLQ ELPVHQRTDA 120 VSSLVYEANA RVRDPVYGCV GAISCLQNQV SELQMQLAGA QAEILCIQMQ QEPKVLPSQQ 180 IDTCTDDERT YFLNNNLPQY LNFPSSSSGN VIQDSQEGGH LWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-77	LBD family protein