PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0371641
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 240aa    MW: 26391.7 Da    PI: 8.4893
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0371641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.93.1e-42521511100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+
  RcHm_v2.0_Chr1g0371641  52 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQV 138
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             ++l+ael++++ e
  RcHm_v2.0_Chr1g0371641 139 QSLQAELNAVRGE 151
                             ********99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MSRERERFDF DEIGKKLKRE IDAPNSSSAH HHHQMGRRHM LGPPGTLNTI TPCAACKLLR  60
RRCAQECPFS PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL  120
RDPVYGCMGA ISALQQQVQS LQAELNAVRG EILKYKYREA NLMDPSSHHH HHHHQVAALF  180
STTSGGAVSV ASLPPSTQPP PPPPPPPPLP PTSSSSSMYT QPNSAADYST LSSENVSYFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-84LBD family protein