PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0372151

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bZIP

Protein Properties

Length: 363aa MW: 40005.3 Da PI: 6.2966

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0372151	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.6e-10	160	216	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l s RcHm_v2.0_Chr1g0372151 160 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 216 9****************************************9998877666655555 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MQDPANPKPD PNPAVSQDSS RLPMTTSFPD PTPSLTLRGS YHRRAQSEVH FRIPDDLDLL 60 QDPFDGPSAS FEELGSEDDL FCTYMDIEKL GSKLEDGSSG PKPENAAGST SQAEAGSGEG 120 SSARPRHRHS SSMDGSLESI EAKKAMAPEK LAELWAVDPK RAKRILANRQ SAARSKERKA 180 RYISELERKV QTLQTEATTL SAQLTLFQRD TTGLSSENTE LKIRLQAMEQ QAQLRDALND 240 ALKKELERLK IATGEALTHT DSYNLGMHHF PYSQSSYFPG QPQSGSRDSQ NIQLPQFHQF 300 QSNMQAPHQP MLGAAAQSHA CSEMMQQDSI GRFQGLDINN RGGSHLVKPE GPSISAGETN 360 RRF

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MQDPANPKPD PNPAVSQDSS RLPMTTSFPD PTPSLTLRGS YHRRAQSEVH FRIPDDLDLL  60
QDPFDGPSAS FEELGSEDDL FCTYMDIEKL GSKLEDGSSG PKPENAAGST SQAEAGSGEG  120
SSARPRHRHS SSMDGSLESI EAKKAMAPEK LAELWAVDPK RAKRILANRQ SAARSKERKA  180
RYISELERKV QTLQTEATTL SAQLTLFQRD TTGLSSENTE LKIRLQAMEQ QAQLRDALND  240
ALKKELERLK IATGEALTHT DSYNLGMHHF PYSQSSYFPG QPQSGSRDSQ NIQLPQFHQF  300
QSNMQAPHQP MLGAAAQSHA CSEMMQQDSI GRFQGLDINN RGGSHLVKPE GPSISAGETN  360
RRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-102	bZIP family protein