PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0372521
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 166aa    MW: 19261.5 Da    PI: 9.9958
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0372521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.43.3e-1956114259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                             dDg +WrKYGqK+  +s++pr Y+rCt++   gC+++k+v++ +   ++ ++tY g+H+++
  RcHm_v2.0_Chr1g0372521  56 DDGQAWRKYGQKMNLNSRHPRCYFRCTHKydqGCKATKHVQQLQ--DTMYKTTYYGNHTCR 114
                             8***************************99999**********9..6899********996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MLPGVEAFSR WEWPPKVDRS SASESKKRPG LKDQSNSYKR RKNSESWTVV SPELTDDGQA  60
WRKYGQKMNL NSRHPRCYFR CTHKYDQGCK ATKHVQQLQD TMYKTTYYGN HTCRDIIKGP  120
QLIMGASDPH KYWWIPNHQT TVSSEAGSIT NYNKKDHQGS HFSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12642KKRPGLKDQSNSYKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-28WRKY family protein