PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0373631
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 293aa    MW: 32092.9 Da    PI: 7.5451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0373631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.8e-21124174255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka++ a+ kl+g
  RcHm_v2.0_Chr1g0373631 124 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTFDTAVEAAKAYDLAAFKLRG 174
                             7********.**********96655..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MEQASALDMI SQHLLSEFNS MESFITSLNN CTSNIDQTPQ YQQADDSFKV SDYLLPSEPE  60
FEFETKPQIV HSEPSPKKNS TLSHRKPTIN VAIPTRPAPA VAPAVSASAT TAQSSINSEN  120
EARHYRGVRR RPWGKYAAEI RDPNKRGSRV WLGTFDTAVE AAKAYDLAAF KLRGSKAILN  180
FPLEINSNIA AAQPLQASVV GRKRRRSESA EGNSEGVESN KAMKKEEETI SSCNSTSPIR  240
SSISSAAAVN CPLTPSNWTS IWDSKDLDGI FSVPPLSPLS PHPCFGYNQL LIH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206RKRRR
2202207RKRRRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-53ERF family protein