PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0373641
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 214aa    MW: 24136.3 Da    PI: 4.4503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0373641genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-17104154255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp     k  r++lg+f+t  +Aaka++ a+ kl+g
  RcHm_v2.0_Chr1g0373641 104 HYRGVRRRP-WGKFAAEIRDP---ArKGSRVWLGTFDTDVDAAKAYDFAAFKLRG 154
                             7********.**********8...4445**********99*************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MAATQEQDES TLELIRQHLL GDFTFTDSFI TNLNYEQSPE ISYFQPIKSE YSISESESAS  60
PVSNYLNPKT EPITEEEPMS SKSEPKRKSS SSNSSSSTGE AARHYRGVRR RPWGKFAAEI  120
RDPARKGSRV WLGTFDTDVD AAKAYDFAAF KLRGRKAILN FPLEAGESDP PSNTGRKRRK  180
SVKQEEEEEE EEAPAPEAEE VEVQSWVDWD GEDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175184GRKRRKSVKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-35ERF family protein