PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0374121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 442aa MW: 47900.6 Da PI: 5.333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0374121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k+F+ + H+r+H RcHm_v2.0_Chr1g0374121 5 YTCKICNKRFKGGKAMGGHMRSH 27 9***********99999999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MDKPYTCKIC NKRFKGGKAM GGHMRSHLAK LPLPPKHPPP PPPPPATPSP PQRLAHSPEF 60 SSSSTHHNLS NNNIFRIRNL NSSVSLMQMM MMQSPPPSTA PAPAPATILK YREVVVAATA 120 VAPPSSMDSA VESDSTESQQ KNLTRRRSKR RRKVIVSAAP PPLEAAEEQQ VSSVSDTFSP 180 EDCALSLMML SRDTWKMKVT NELAYGDEES LEEEQEEEVV EEEEEEDDDV VFIPRTTPKS 240 TSSNNQGGKY KCDTCKKEFQ SYQALGGHRA SHKRVRHQVL EEDDDDVEVG DDDSEEDEVL 300 AVGGRGGGNG RGSGNGGGGG VQGYNGKSAV VEHPPPRVFE CPFCFKLFDS GQALGGHKKV 360 HYYNNNTNNN TSYNNTNNNS SSSNVPAASS TTNTNTNTNT NNARASSSSA NVSSANYGGN 420 NLVIDLNLPA PEEEFDFSTI SD

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MDKPYTCKIC NKRFKGGKAM GGHMRSHLAK LPLPPKHPPP PPPPPATPSP PQRLAHSPEF  60
SSSSTHHNLS NNNIFRIRNL NSSVSLMQMM MMQSPPPSTA PAPAPATILK YREVVVAATA  120
VAPPSSMDSA VESDSTESQQ KNLTRRRSKR RRKVIVSAAP PPLEAAEEQQ VSSVSDTFSP  180
EDCALSLMML SRDTWKMKVT NELAYGDEES LEEEQEEEVV EEEEEEDDDV VFIPRTTPKS  240
TSSNNQGGKY KCDTCKKEFQ SYQALGGHRA SHKRVRHQVL EEDDDDVEVG DDDSEEDEVL  300
AVGGRGGGNG RGSGNGGGGG VQGYNGKSAV VEHPPPRVFE CPFCFKLFDS GQALGGHKKV  360
HYYNNNTNNN TSYNNTNNNS SSSNVPAASS TTNTNTNTNT NNARASSSSA NVSSANYGGN  420
NLVIDLNLPA PEEEFDFSTI SD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-20	C2H2 family protein