PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0374531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 312aa    MW: 36129.3 Da    PI: 6.5643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0374531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.41.9e-5571361129
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++  ++ +ee+ +wyfFs++dkky+tg+r+nrat++g+Wk
  RcHm_v2.0_Chr1g0374531   7 VPPGFRFHPTDEELVDYYLRKKVTARRIDL-DVIKDVDLYKIEPWDLQElcRIGTEEQsDWYFFSHKDKKYPTGTRTNRATAAGFWK 92 
                             69****************************.9***************954555554445**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                             atg+dk++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  RcHm_v2.0_Chr1g0374531  93 ATGRDKAIYA-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                             **********.8899****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVT ARRIDLDVIK DVDLYKIEPW DLQELCRIGT  60
EEQSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YAKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKKLPS MRRMSEHESP CWYDEHVSFM  180
PDLDSPNHNN SNSSINNQMA YHGHFPNYPC KKELDHLPFQ HHVPNEHFFQ LPLLDSPKLL  240
LQSSANAAVS SNSMTAAAYS IDINQNFHAV YGNSSNELQA VDDDQLTDWR VLDKFVASQL  300
SQDDVSKGNS YS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-116NAC family protein