PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0374751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 212aa    MW: 23497.9 Da    PI: 4.7794
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0374751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.18.2e-153191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+t+t++ql++ +el++    ++p+ e+++ +  +l    +++ ++V++WFqN +a+e++
  RcHm_v2.0_Chr1g0374751 31 NRWTPTPDQLRIFQELYYDraLKNPTPEQIQGICLHLkpygQIENKNVFFWFQNLKARERQ 91
                            7****************96579*************************************97 PP
2Wus_type_Homeobox90.91.2e-292992264
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            +++RWtPtp+Q++i +ely+ ++l++P+ e+iq i  +L+ yG+ie+kNVf+WFQN kaRerqk
  RcHm_v2.0_Chr1g0374751 29 TNNRWTPTPDQLRIFQELYYdRALKNPTPEQIQGICLHLKPYGQIENKNVFFWFQNLKARERQK 92
                            679***************9879*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MELQAQQPTE EGGSIQAAGS SANTPIRPTN NRWTPTPDQL RIFQELYYDR ALKNPTPEQI  60
QGICLHLKPY GQIENKNVFF WFQNLKARER QKLREFRNVR VGGSLDLNFG STSSTDDGRS  120
IDLNFGSTGS TSTDRSIDLN FGSRVGYGVD GSIMEQRGEY HQEIETLPLF PMHGEDIFGN  180
MKTTSEGGSG YGGGSRISLE LSLNSYGDAD MA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-24WOX family protein