PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0375031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 172aa    MW: 19349.7 Da    PI: 6.6813
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0375031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.2e-1229116796
                             .-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                      B3   7 psdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                             + d  k g   l    ++++g +      + l+    g+ W+vkl+ + ++++++l++GW+ F +   L++gD++vF ++g+ s f 
  RcHm_v2.0_Chr1g0375031  29 NVDDIKAGKKELRAAAVKKYGDQMGD--HIFLKVpNCGEPWKVKLRKSPSGNQMWLEEGWEAFTNFYLLEQGDTMVFNYEGKhSHF- 112
                             55556666666666777778766444..5667764568*******88888888**************************9976777. PP

                             .EEEE CS
                      B3  92 lvvkv 96 
                               v++
  RcHm_v2.0_Chr1g0375031 113 -QVRI 116
                             .6665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MASSAKRNRK GKRPAVPEDS PFFCLRIVNV DDIKAGKKEL RAAAVKKYGD QMGDHIFLKV  60
PNCGEPWKVK LRKSPSGNQM WLEEGWEAFT NFYLLEQGDT MVFNYEGKHS HFQVRIIGWD  120
DMETDYPRHG DEVKAMVISS GSSADGQENE ARVIVISSGS SADDHENEAR AK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-11B3 family protein