PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 189aa    MW: 20314.3 Da    PI: 9.065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-131769155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                            ++++h  +Er+RR+++   ++ Lr+ lP+ +    ++K s a+    Av++Ik+Lq
  RcHm_v2.0_Chr1g0376011 17 KKMMHRDIERKRRQEMAALYASLRSTLPPqS---IKGKRSLADHMNDAVNHIKHLQ 69
                            6899*************************55...*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MDNDQPCANS IIDDSQKKMM HRDIERKRRQ EMAALYASLR STLPPQSIKG KRSLADHMND  60
AVNHIKHLQT RIKELGAQRN DLKIQTSSPD LSCTSALGLA GNLSGSTGSS SSLLAGNFSR  120
SRVAVNPCLG GVEIVIISCV TGGSAEPQGV VLSRLLQILL EQGLTVISCA TTQVNKRLVY  180
TIQSEVASL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-42bHLH family protein