PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376061
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 236aa    MW: 26619.2 Da    PI: 6.3093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376061genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.55e-0873123355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +   +Er+RR+ +  + + Lr+llP  +    ++K s  e   +Av+YIk+L+
  RcHm_v2.0_Chr1g0376061  73 IMRRDNERQRRQVMAIRTASLRSLLPLeL---IKGKRSITEHINEAVNYIKQLK 123
                             566789*********************78...********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MFPFPHDHQS KDMELQISSS TPHQEDFMQQ DLIMMRGSHD VLPSDLQGRS LSNINISEAN  60
INNMAADSDE RKIMRRDNER QRRQVMAIRT ASLRSLLPLE LIKGKRSITE HINEAVNYIK  120
QLKEKIQELN AKREELRRVY KHYSSSAHDF SPEIDENLGT KSTSNIMVGL TCWGGVEIVA  180
STNGTNCSEL EGFSLSGVLK ALLAEGLTVV ECASTTANQR LIHSIQCEVW LLVPLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-29bHLH family protein