PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26131.3 Da    PI: 8.0585
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.99.5e-27959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k+ienk+nrqvtfskRr g++KKA+E+SvLCda+va+i+  s+gk+++++s
  RcHm_v2.0_Chr1g0376191  9 KKIENKINRQVTFSKRRLGLFKKAQEISVLCDAQVALIVSCSRGKVFDFAS 59
                            68**********************************************986 PP
2K-box94.91.3e-31771725100
                   K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                             s+ +++e+++++l+qe++kLk ++e+Lqr+qRh+lGedLe+L lkeL++Le+qL++ l++ R++K++++l+q+e l++ke++l+e++
  RcHm_v2.0_Chr1g0376191  77 SQDNVAENETQNLYQEVSKLKVKYESLQRSQRHFLGEDLEKLRLKELENLEKQLDRTLSQARQRKMQMMLDQLEALRRKENDLEEIH 163
                             334499********************************************************************************* PP

                   K-box  92 kaLrkklee 100
                             k+L+++lee
  RcHm_v2.0_Chr1g0376191 164 KQLKSELEE 172
                             *****9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MGRGKVELKK IENKINRQVT FSKRRLGLFK KAQEISVLCD AQVALIVSCS RGKVFDFAST  60
NDVNEILNRY QQSCYSSQDN VAENETQNLY QEVSKLKVKY ESLQRSQRHF LGEDLEKLRL  120
KELENLEKQL DRTLSQARQR KMQMMLDQLE ALRRKENDLE EIHKQLKSEL EEREKHSNND  180
DDEALIQGRP GGEPTVAAGA SHENISTKTR SANANQQEPT YEYARA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.17e-47MIKC_MADS family protein