PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25750.4 Da    PI: 9.9388
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.8e-29959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien + rqv fskRrng+lKKA+ELSvLCdaevavi+fs++++lye+ss
  RcHm_v2.0_Chr1g0376251  9 KRIENATSRQVAFSKRRNGLLKKAFELSVLCDAEVAVIVFSQKNRLYEFSS 59
                            79***********************************************96 PP
2K-box744.3e-2579171698
                   K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                             ++   e+ +++l++e+a + k+ie+L+ +qR+llG dL+++s +e +q+ +qLe+sl+k+R++K++ll+eqie+l+ ke+ l een 
  RcHm_v2.0_Chr1g0376251  79 NTTEVEQYMQQLKHESADMAKKIETLEASQRRLLGHDLDPCSAQEVNQMSSQLERSLRKVRERKDQLLTEQIERLKAKERFLLEENA 165
                             445678889****************************************************************************** PP

                   K-box  93 aLrkkl 98 
                             +L+++ 
  RcHm_v2.0_Chr1g0376251 166 KLHTQC 171
                             **9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MVRGKIEVKR IENATSRQVA FSKRRNGLLK KAFELSVLCD AEVAVIVFSQ KNRLYEFSSS  60
DMQKTIKKYQ KHAKGALTNT TEVEQYMQQL KHESADMAKK IETLEASQRR LLGHDLDPCS  120
AQEVNQMSSQ LERSLRKVRE RKDQLLTEQI ERLKAKERFL LEENAKLHTQ CGARPCQKPL  180
VQEKGVGAAS YNWMNSSQSS SSQTINNSDQ VETRLFIGPP VMRCE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136143RKVRERKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.33e-73MIKC_MADS family protein