PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25843.8 Da    PI: 10.2556
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.2e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien ++rqvtfskRrng+lKKA+ELSvLCdaevavi+fs++++lye+ss
  RcHm_v2.0_Chr1g0376271  9 KRIENATRRQVTFSKRRNGLLKKAYELSVLCDAEVAVIVFSQKNRLYEFSS 59
                            79***********************************************96 PP
2K-box72.51.2e-2481171898
                   K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                                e+ +++l++e+a + k+ie L+ +qR+llG dL+s+s +eL+q+ +qL++sl+ +R++K +l++eqie+ + ke+ l  en +L
  RcHm_v2.0_Chr1g0376271  81 TEVEQYMQQLKHESADMTKKIEILEASQRRLLGHDLDSCSAQELNQISSQLDRSLRIVRERKAQLFMEQIERVKAKERLLLGENAKL 167
                             4567889******************************************************************************** PP

                   K-box  95 rkkl 98 
                             ++k 
  RcHm_v2.0_Chr1g0376271 168 HTKC 171
                             *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MVRGKIEMKR IENATRRQVT FSKRRNGLLK KAYELSVLCD AEVAVIVFSQ KNRLYEFSSS  60
NMQKTIKQYH KHAKGALTKT TEVEQYMQQL KHESADMTKK IEILEASQRR LLGHDLDSCS  120
AQELNQISSQ LDRSLRIVRE RKAQLFMEQI ERVKAKERLL LGENAKLHTK CGSRPCQKPI  180
VQEKGVGEAS CNWMNSSPSS RSQTISNSDQ VETRLFIGPP VMRCE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-77MIKC_MADS family protein