PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376291
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25473.3 Da    PI: 9.8989
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376291genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.5e-31959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss
  RcHm_v2.0_Chr1g0376291  9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQNGRLYEFSS 59
                            79***********************************************96 PP
2K-box69.21.3e-2382170997
                   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                               e+ +++l++e+a + k+ie L+ +qR+llG dL+s+s  eL+q+ +qLe+sl  +R++K +l++eqie+l+ k + l een +L+
  RcHm_v2.0_Chr1g0376291  82 EVEQCMQQLKHESADMAKKIEILEASQRRLLGHDLDSCSAPELNQISSQLERSLCIVRERKAQLFMEQIERLKAKGRLLLEENIKLH 168
                             5677799*******************************************************************************9 PP

                   K-box  96 kk 97 
                             ++
  RcHm_v2.0_Chr1g0376291 169 TE 170
                             87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MVRGKIQMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ NGRLYEFSSS  60
DMQKTINQYH KHAKGVQTNT IEVEQCMQQL KHESADMAKK IEILEASQRR LLGHDLDSCS  120
APELNQISSQ LERSLCIVRE RKAQLFMEQI ERLKAKGRLL LEENIKLHTE CGARRCQKPL  180
IQKKGVGAAS CNWKNSSQSS SSQTISNSDQ VETRLFIGPP VLHSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.39e-76MIKC_MADS family protein