PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0376501

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 429aa MW: 48927.3 Da PI: 6.2296

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0376501	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	365	385	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C +Fs+k nL++H++ RcHm_v2.0_Chr1g0376501 365 FRCKSCQFCFSNKKNLNSHLS 385 89*****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MGSPPTKVQD DILREVDFLQ GNDVPYEMGF GVFGSQIVLA GGLQLPQIYP TSKVYVLDTL 60 RDKPKFIKRK ANKPKAKARD HGFPEFQSPK YLPQLMEIEG KLYALELKLE EDFPSSSSFE 120 VFDPQTGSWA ALPDHPIIEC GGLLSCAVVG TKFLISARDT PAYCFDVAEP TRPWNELRLR 180 HDGHKLYDYN YPNSLPFLQV LVLDLEEDNH KILFSSRGND IRVFHMNLSN DLALELIATV 240 QVDIKFDESS VSFTHLGGQK VCFVFLDWWI FDKMRGVFFT FEYSFSKSAA SPDTHTSSCG 300 DDPYFRVSYP SNSNGRSFSA KTLGWRTFEY HYWSEEASPI STEVCGLAVL PLHHRHSEEQ 360 QQEPFRCKSC QFCFSNKKNL NSHLSISECC RSEQRLVQCK FCGCNFFHQE LYAHFSSSVS 420 CRSNFTGEI

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MGSPPTKVQD DILREVDFLQ GNDVPYEMGF GVFGSQIVLA GGLQLPQIYP TSKVYVLDTL  60
RDKPKFIKRK ANKPKAKARD HGFPEFQSPK YLPQLMEIEG KLYALELKLE EDFPSSSSFE  120
VFDPQTGSWA ALPDHPIIEC GGLLSCAVVG TKFLISARDT PAYCFDVAEP TRPWNELRLR  180
HDGHKLYDYN YPNSLPFLQV LVLDLEEDNH KILFSSRGND IRVFHMNLSN DLALELIATV  240
QVDIKFDESS VSFTHLGGQK VCFVFLDWWI FDKMRGVFFT FEYSFSKSAA SPDTHTSSCG  300
DDPYFRVSYP SNSNGRSFSA KTLGWRTFEY HYWSEEASPI STEVCGLAVL PLHHRHSEEQ  360
QQEPFRCKSC QFCFSNKKNL NSHLSISECC RSEQRLVQCK FCGCNFFHQE LYAHFSSSVS  420
CRSNFTGEI