PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376561
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 434aa    MW: 47072.3 Da    PI: 7.7567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.2e-09112132526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C+++ + G C+yGdrCkF H+
  RcHm_v2.0_Chr1g0376561 112 VCNYWVQ-GNCSYGDRCKFLHS 132
                             6******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MDVDGGGSKR IFTRLGGPQS DPNKNQKVCY HWRAGKCNRH PCPYLHRELP APPGGLNGTA  60
SSKRQHGFAA TTDGPSSGPR GRGPNNFNGG ASNTWGRTGA GNRVFVRKMD KVCNYWVQGN  120
CSYGDRCKFL HSWSMGDCVS LLTTLEGHQN VVSGIALPSG SDKLYTGSKD ETVRVWDCQS  180
GQCLGVINLG GEVGCMISEG PWVFVGIPNA VKAWNTQANS EMSLSGPVGQ VYAMVVGNDL  240
LFAGTQDGSI LAWKFNTVTN CFEPAYSLKG HTLAVVSLVV GANRLYSGSM DHSIRVWSLE  300
NLQCIQTLTE HTSVVMSVLC WDQFLLSSSL DQKLKIWAAT QSGNLEVTYT HEEDHPLLTL  360
CGMHDSEAKP VLLCACNDNT VRLYDLPSFS ERGKIFSKQE IRAIQVGPGG LFFTGDGTGQ  420
VRVWKWLAEP VATA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein