PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376651
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 233aa    MW: 24448.9 Da    PI: 4.8998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-1562110255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+G+r ++ +g+Wv+eIr+p++   + r++lg++  +e+Aa+a++ a+ +l+g
  RcHm_v2.0_Chr1g0376651  62 LYRGIR-CR-SGKWVSEIREPRK---SNRIWLGTYAKPEMAAAAYDVAAIALKG 110
                             69***9.55.6*********954...49**********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MADPYGNVPK SDDQPSNSNP PFFIQLPPTS SSSDVNDQQH HDLLGLRSPT GGSISSPGRH  60
PLYRGIRCRS GKWVSEIREP RKSNRIWLGT YAKPEMAAAA YDVAAIALKG PDTALNFPNA  120
LITYPIPASS AASDIRAAAA RAAASRAENI KPGESSSGGA AGRVENVHRS GGGRGTGVTS  180
DDGGGCQEFM DEEALLNMPN LLADMAEGML VSPPRDPADD SPGNSDGESL WSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-41ERF family protein