PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376691
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 395aa    MW: 43951.8 Da    PI: 7.9826
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.2e-3951041100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrr+C++dCv+apyfp+++p++f  vh+++Gasnv k+l+ l +  r +a+++l+yeAe r++dPvyG++++i++lqqq+
  RcHm_v2.0_Chr1g0376691   5 RCAACKYLRRRCPSDCVFAPYFPSNNPQRFDSVHRIYGASNVAKMLEPLTPYFRAQAAETLCYEAESRIHDPVYGCAAIIFQLQQQI 91 
                             6************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                              ++++ela++++e
  RcHm_v2.0_Chr1g0376691  92 YNTESELAKTRAE 104
                             ********99987 PP
2DUF260117.58.3e-372673691100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee...redamsslvyeAearardPvyGavgvilklq 84 
                             +CaaCk+lr++C++dC++apyfp ++p++f+ vh+++Ga+nv  llk+l+  +   r +a+++l+yeAe r+++PvyG++++i++lq
  RcHm_v2.0_Chr1g0376691 267 RCAACKYLRKGCPEDCIFAPYFPPNNPQRFEHVHRIYGAKNVATLLKELESLQpyfRAQAIETLCYEAESRIQNPVYGCAALIFHLQ 353
                             6*********************************************99955444459****************************** PP

                  DUF260  85 qqleqlkaelallkee 100
                             qq+++ ++ela++++e
  RcHm_v2.0_Chr1g0376691 354 QQIHNIESELAKIRAE 369
                             ***********99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MVNGRCAACK YLRRRCPSDC VFAPYFPSNN PQRFDSVHRI YGASNVAKML EPLTPYFRAQ  60
AAETLCYEAE SRIHDPVYGC AAIIFQLQQQ IYNTESELAK TRAEIAVIRS NGKGKEPEVQ  120
PSTDQVHDGF RACPQSTMMR HLLPPEMASL DVVQNMVNNE AMVVFPQPVV PYSYAQAAAG  180
TSNGLAARSE PPFSTWTAVS RWRGSGAGKV FAGRGAGSST MGNRTLRINE EGNNQPRDMR  240
AVNRNGSVIG LFDHSEIHSR FRIMVGRCAA CKYLRKGCPE DCIFAPYFPP NNPQRFEHVH  300
RIYGAKNVAT LLKELESLQP YFRAQAIETL CYEAESRIQN PVYGCAALIF HLQQQIHNIE  360
SELAKIRAEI AVLSSNGQGQ GASEMQPSID QVHED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-46LBD family protein