PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0376961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 289aa    MW: 32202.2 Da    PI: 8.3618
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0376961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.6e-34271172101
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d++++++i ws +g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++
  RcHm_v2.0_Chr1g0376961  27 FLSKTYQLVDDPAIDDVIAWSGDGSSFVVKNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKIIPDR---------WEFSNDCFRR 104
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkk 101
                             g+k+ll++i+r++
  RcHm_v2.0_Chr1g0376961 105 GEKRLLCEIQRRR 117
                             ***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MAPPPTVEQN GESTSGESTQ RGSPTPFLSK TYQLVDDPAI DDVIAWSGDG SSFVVKNPTV  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKI IPDRWEFSND CFRRGEKRLL CEIQRRRITP  120
PAVAPAVIPA KPITSPANSG EEQVTTSSSS SPRPRIPWQL VEENERLRKE NLRLTKELAE  180
IKSLCHNIFS LVSNYACNKP PEGGLGELTQ LSLMPGERFS GGETSPKIFG VEIGAKRARE  240
EGGGGDEETD LRLRQPSGGG VVKSEPSDVE YREKPWLKQC HRANQRVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-71HSF family protein