PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0379041

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 180aa MW: 20538.8 Da PI: 9.9064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0379041	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.1e-05	4	26	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++F+++ +L+ H + H RcHm_v2.0_Chr1g0379041 4 PCEVCHRRFPDNITLQIHRENvH 26 5*****************98877 PP
2	zf-C2H2	13.5	0.00022	29	48	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++Cg sF + +L++H RcHm_v2.0_Chr1g0379041 29 HICEICGLSFYSDTLLQTHK 48 68*****************6 PP
3	zf-C2H2	19.2	3.3e-06	55	78	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++Cg sF++ +L++H ++ H RcHm_v2.0_Chr1g0379041 55 HTCEICGVSFRSDAQLQSHRKSkH 78 79*******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MSPPCEVCHR RFPDNITLQI HRENVHVLHI CEICGLSFYS DTLLQTHKQC VHTLHTCEIC 60 GVSFRSDAQL QSHRKSKHPD LKKKKMMKKK KKKKRQKKKK KNEEEEEEEK AKAEGEHASS 120 FPIEKTMNKA PSPSSSISGE SFPIEKTMNK APSPSISGES VTWLTFTLGI HISRICTISK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	99	LKKKKMMKKKKKKKRQKKK
2	82	101	KKKKMMKKKKKKKRQKKKKK
3	82	112	KKKKMMKKKKKKKRQKKKKKNEEEEEEEKAK
4	83	102	KKKKMMKKKKKKKRQKKKKK
5	88	94	KKKKKKK
6	88	100	KKKKKKKRQKKKK
7	88	101	KKKKKKKRQKKKKK
8	89	95	KKKKKKK
9	89	101	KKKKKKKRQKKKK
10	90	102	KKKKKKKRQKKKK
11	90	98	KKKKKRQKK
12	91	98	KKKKRQKK