PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0379461
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 223aa    MW: 24361.8 Da    PI: 4.4327
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0379461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox491e-154098456
                            -SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                Homeobox  4 RttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                            R+t+t+ ql++L+ l++    +yps e+++e+   l    ++++++V++WFqN +a+e+
  RcHm_v2.0_Chr1g0379461 40 RWTPTPAQLRILQGLYYDkgYKYPSPEQIQEICLYLkpygEIEDKNVFFWFQNLKARER 98
                            9***************96579************************************98 PP
2Wus_type_Homeobox87.11.9e-2838100364
       Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                             + RWtPtp Q++iL+ ly+ +G + P+ e+iq+i   L+ yG+iedkNVf+WFQN kaRer k
  RcHm_v2.0_Chr1g0379461  38 TIRWTPTPAQLRILQGLYYdKGYKYPSPEQIQEICLYLKPYGEIEDKNVFFWFQNLKARERLK 100
                             67***************9889****************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MELQTQQQLE LQAQQPTEEG GSNQAAGSSA NTPIRPTTIR WTPTPAQLRI LQGLYYDKGY  60
KYPSPEQIQE ICLYLKPYGE IEDKNVFFWF QNLKARERLK LKEFRNVRVG GSLDLNFGST  120
SSTDDGRSID LNFGSTGSTG DDGSIDLTLG SQSFMERRGG DHQEVETLPL FPEHGENILG  180
NPKTTSEGGS SFGYYFGGSG GYNSGSPVSL ELSLNPSGAT DLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.19e-15WOX family protein