PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0380021
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 364aa    MW: 40765.6 Da    PI: 4.8602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0380021genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20124173255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+W+AeIrdp   gkr r +lg+f+taeeAa  +++a+ kl+g
  RcHm_v2.0_Chr1g0380021 124 KFRGVRQRP-WGKWAAEIRDP---GKRVRLWLGTFDTAEEAAMVYDNAAIKLRG 173
                             89*******.**********9...557*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MEMESSSFLC PIKYTQHRNT TKKLTKPSRK IEPGTSIAPK IIRISMTDHD ATDSSSDEEE  60
TEYYFGRRRV KKYINEISIE TDLRTNPAIT NNGRKRPALE TRPATRRPAQ KSSCPPANGG  120
GNRKFRGVRQ RPWGKWAAEI RDPGKRVRLW LGTFDTAEEA AMVYDNAAIK LRGPDAQTNF  180
SPPQMVGTVA DKVDDQNIVN EVEIEPETTP NVTVSVSGYD SGEETHHLSS PTSVLQFRTH  240
PIEEAEPPQL EKTALLSKPT EKVNHVRECG VEHSQIPVEL RYMEEDAFRF PTPESPLFES  300
PLFFESPFFD DSAAVAGPLL FDDFCDLYAF ADSSFSAQAT SSMMTCQGDD CFQDIFGSDP  360
LVVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-50ERF family protein