PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0381431
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 231aa    MW: 25200.7 Da    PI: 4.9101
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0381431genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.52.7e-1447105355
                             --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 
                             +R+++t+ ql++L+el++    ++p+ e+++ +  +l    +++ ++V++WFqN +a+e
  RcHm_v2.0_Chr1g0381431  47 NRWAPTPAQLRILQELYYDrgLKNPNPEQIQGICLHLkpygQIENKNVFFWFQNLKARE 105
                             7****************9657************************************97 PP
2Wus_type_Homeobox91.76.8e-3045108264
       Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                             +++RW+Ptp Q++iL+ely+ +Gl++Pn e+iq i  +L+ yG+ie+kNVf+WFQN kaRe qk
  RcHm_v2.0_Chr1g0381431  45 TNNRWAPTPAQLRILQELYYdRGLKNPNPEQIQGICLHLKPYGQIENKNVFFWFQNLKARESQK 108
                             679***************9879***************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MEPRTLQLMD LQTQQHMELQ QQQPTEGGGS NQAAGSSANT PIRPTNNRWA PTPAQLRILQ  60
ELYYDRGLKN PNPEQIQGIC LHLKPYGQIE NKNVFFWFQN LKARESQKLK EIRNVRVGGS  120
LDLKFGSTSS TDGGRSIDLN FGSTDSTDDD GSIDLTLGLQ SFMERRGGDH QEVETLPLFP  180
EHGENILGNP KTTSEGGSSF GYYSGGSGGY NSGSHVSLEL SLNPSGAADL A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-20WOX family protein