PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0382001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 285aa    MW: 32894.2 Da    PI: 6.8521
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0382001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-11361211097
                             HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                              lk g   lp   ++++g + + +  + l+    g+ W+++l+ + +++r++l+kGW+eF++   L++gD  +F+  +++ +++ ++
  RcHm_v2.0_Chr1g0382001  36 DLKDGKKELPPAAVRKYGDQMADH--IFLKVpNCGKHWKIELRTSPRRDRMWLEKGWEEFASFYLLDQGDLATFSS-EDEHAHFQIR 119
                             566777889********9997775..777774579*******99999999*************************3.3366655666 PP

                             EE CS
                      B3  96 vf 97 
                             +f
  RcHm_v2.0_Chr1g0382001 120 IF 121
                             65 PP
2B348.61.5e-151942831399
                             TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             ++r+ +  +fa eh  k+ +  +l+l+++ g r W+v++i     +++ ++++ ++GWk+F ++n+L+egD++v++l++  e++++v
  RcHm_v2.0_Chr1g0382001 194 TNRVFINPEFALEHFCKEGSCCDLSLQNTLGdRIWTVQCISytisDGRMRTVISGAGWKSFRQDNHLEEGDVLVLELIE--ERRCRV 278
                             46799*********77788889******6666*******6667755555558889*********************996..555789 PP

                             EEE-S CS
                      B3  95 kvfrk 99 
                             +++r+
  RcHm_v2.0_Chr1g0382001 279 SIIRA 283
                             99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MKDWTFEMGE RSRNGKRPAV CEESKGFCLR IQSREDLKDG KKELPPAAVR KYGDQMADHI  60
FLKVPNCGKH WKIELRTSPR RDRMWLEKGW EEFASFYLLD QGDLATFSSE DEHAHFQIRI  120
FSWDDMEIYY PIRGGGVDVS GPNRKETRVE AEARAISISP RSSADEHQYD ISKVSSFRSD  180
KPCLNVQITA TSLTNRVFIN PEFALEHFCK EGSCCDLSLQ NTLGDRIWTV QCISYTISDG  240
RMRTVISGAG WKSFRQDNHL EEGDVLVLEL IEERRCRVSI IRAQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.17e-08B3 family protein