PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr1g0382011
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 310aa    MW: 35286.8 Da    PI: 8.391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr1g0382011genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-1131116996
                             HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                      B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                               lk g   lp   ++e+g+       + l+    g+ W+++l+ + +++r++l+kGW+eF++   L++gD+ +F+ +g+ s f   
  RcHm_v2.0_Chr1g0382011  31 EDLKDGKKELPPAAVREYGHHL--ADHIYLKVpNCGKHWKIELRTSPRRDRMWLEKGWEEFANFYLLDQGDMATFSSEGEnSHF--Q 113
                             556777788999******9774..446888884579*******99999999*************************77755555..6 PP

                             EEE CS
                      B3  94 vkv 96 
                             v++
  RcHm_v2.0_Chr1g0382011 114 VSI 116
                             665 PP
2B351.71.6e-162203081499
                             T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                              r+ +   fa+eh +k  +  +ltl++ +g ++W+++++  +++ gr   ++ ++GWk F ++n+L+egD++v+++++  e++++v+
  RcHm_v2.0_Chr1g0382011 220 FRVFINQAFASEHFYKADTCCDLTLQNNQGdKVWTIQCCSyKRSNGRiqaIISGAGWKAFRQDNHLEEGDVCVLEVIE--ERKCRVS 304
                             4789999******777778889*****9888*******6634444447879999*********************765..67778** PP

                             EE-S CS
                      B3  96 vfrk 99 
                             +fr+
  RcHm_v2.0_Chr1g0382011 305 IFRA 308
                             9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MASSSSLAGK GKRHAVQENS PAFCLRIFSR EDLKDGKKEL PPAAVREYGH HLADHIYLKV  60
PNCGKHWKIE LRTSPRRDRM WLEKGWEEFA NFYLLDQGDM ATFSSEGENS HFQVSIYSWD  120
DMEIEYPIRI GADVSTPDRK EIGAEALAVA MSVSPRSSAD ERGSAKVRRR RRRVTGSEAE  180
ARAISISPRS SADEHEYDVS SFRSDKPFLD IRIPAKTLAF RVFINQAFAS EHFYKADTCC  240
DLTLQNNQGD KVWTIQCCSY KRSNGRIQAI ISGAGWKAFR QDNHLEEGDV CVLEVIEERK  300
CRVSIFRAKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173RRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-09B3 family protein