PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr1g0383091

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 577aa MW: 64552.4 Da PI: 4.7521

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr1g0383091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.8e-52	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lp GfrF+Ptdeel+++yL+ k++g++ ++ +vi+e+d++k+ePwdLp + +++++ ew+fF+++dkky++g r nrat++gyWka RcHm_v2.0_Chr1g0383091 13 LPLGFRFRPTDEELIDFYLRSKINGNDKQV-SVIREIDVCKWEPWDLPdlSVIQTQDPEWFFFCPQDKKYPNGFRLNRATSAGYWKA 98 699**********************999.99**********96447888999************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd++++s + +lvg+kktLvf++grapkg++t+Wvmheyr+ RcHm_v2.0_Chr1g0383091 99 TGKDRRIKS-GANLVGMKKTLVFHTGRAPKGKRTNWVMHEYRA 140 *****.999**************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MVMDLGMVSL SSLPLGFRFR PTDEELIDFY LRSKINGNDK QVSVIREIDV CKWEPWDLPD 60 LSVIQTQDPE WFFFCPQDKK YPNGFRLNRA TSAGYWKATG KDRRIKSGAN LVGMKKTLVF 120 HTGRAPKGKR TNWVMHEYRA TQQELDGTHP GQSPFVLCRL FKKQDESIEI SNCDETEPAV 180 SSPSVVKSPL EDTQSAQALV PPSPSPSPSC QVQPEKLPTR AECTNADNCD GTASDPLPIS 240 ECPSNSCNDY DGPDQLDLPL EEYLSRFYDP EEEPLFSPMH SHMEVEHCYP GSNGLNNGHR 300 GLQFPNDSND QDAEFSEFLS TIFNSSEECS EDLDTQICET KNVVSMKNNG SCNDADTKLN 360 EVLYMEELQT PIWLEGNIDR KGPMQIATTP QNYEQSSRVE VSSNHSNALL SPSGGTGIRI 420 MTRQTPPTST VRQSIMTQGE APRRLMYQNK LQIGSIQCRN MSQNLHYRPE DHERKLIAVE 480 ESRDPEKIAS SDTAFDAGNA LDEPLETLIV ESSTQTISAT PNITSMGSIL TGKKVPSVVL 540 KASPAGHYIW SFAFLFRVVV GAILFMIFAS MWGFHKF

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MVMDLGMVSL SSLPLGFRFR PTDEELIDFY LRSKINGNDK QVSVIREIDV CKWEPWDLPD  60
LSVIQTQDPE WFFFCPQDKK YPNGFRLNRA TSAGYWKATG KDRRIKSGAN LVGMKKTLVF  120
HTGRAPKGKR TNWVMHEYRA TQQELDGTHP GQSPFVLCRL FKKQDESIEI SNCDETEPAV  180
SSPSVVKSPL EDTQSAQALV PPSPSPSPSC QVQPEKLPTR AECTNADNCD GTASDPLPIS  240
ECPSNSCNDY DGPDQLDLPL EEYLSRFYDP EEEPLFSPMH SHMEVEHCYP GSNGLNNGHR  300
GLQFPNDSND QDAEFSEFLS TIFNSSEECS EDLDTQICET KNVVSMKNNG SCNDADTKLN  360
EVLYMEELQT PIWLEGNIDR KGPMQIATTP QNYEQSSRVE VSSNHSNALL SPSGGTGIRI  420
MTRQTPPTST VRQSIMTQGE APRRLMYQNK LQIGSIQCRN MSQNLHYRPE DHERKLIAVE  480
ESRDPEKIAS SDTAFDAGNA LDEPLETLIV ESSTQTISAT PNITSMGSIL TGKKVPSVVL  540
KASPAGHYIW SFAFLFRVVV GAILFMIFAS MWGFHKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	5e-88	NAC family protein