PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0085401

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 94aa MW: 11207.9 Da PI: 11.161

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0085401	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.1	2.2e-16	7	68	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R++ t +q+++ +el+++ r p+ e+ ++++ +l +++ ++V++WF N+Ra+ek+ RcHm_v2.0_Chr2g0085401 7 STRWATTYDQIRIFKELYYNegVRSPTVEQVQRISFQLkqygKIKSKNVFYWFRNHRAREKQ 68 58**************97789***********************************97 PP
2	Wus_type_Homeobox	94.1	1.2e-30	6	70	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW+ t +Qi+i +ely+ +G+r+P+ e++qri+ +L++yGki++kNVfyWF N++aRe+qk+ RcHm_v2.0_Chr2g0085401 6 SSTRWATTYDQIRIFKELYYnEGVRSPTVEQVQRISFQLKQYGKIKSKNVFYWFRNHRAREKQKK 70 689*************9779***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence
MLCKRSSTRW ATTYDQIRIF KELYYNEGVR SPTVEQVQRI SFQLKQYGKI KSKNVFYWFR 60 NHRAREKQKK KRFTSDVPVP MQRSGLVGNG NGTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-30	WOX family protein