PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0088171
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family YABBY
Protein Properties Length: 186aa    MW: 20736.4 Da    PI: 8.4138
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0088171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY219.31.2e-6761604170
                   YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 
                             +  +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l++++         ++++++ ++  ++s  +++ 
  RcHm_v2.0_Chr2g0088171   6 DAVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSCQDV--------QAQNQNAQNYRIDSGSSSKG 84 
                             5679************************************************9999995........44444444444444444444 PP

                   YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                             + +  ++  ++     +++++   v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  RcHm_v2.0_Chr2g0088171  85 NRKIATRD-SIA---VHHATEDRGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 160
                             43333333.223...3334444469*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MSSCIDAVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS  60
CQDVQAQNQN AQNYRIDSGS SSKGNRKIAT RDSIAVHHAT EDRGVNRPPE KRQRVPSAYN  120
QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLETNNQAKL DNGSEKHLLS  180
RAALLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.15e-87YABBY family protein