PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0088321
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 205aa    MW: 22908.8 Da    PI: 10.2096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0088321genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19656155
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                            ++++GVr++  +g+Wv+eIr+p        +r++lg+f++aeeAa+a++aa+  + g
  RcHm_v2.0_Chr2g0088321  6 KKFRGVRQRN-WGSWVSEIRHP-----LlkRRVWLGTFDSAEEAARAYDAAAILMSG 56
                            59*****998.**********8.....334*********************987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MVQSTKKFRG VRQRNWGSWV SEIRHPLLKR RVWLGTFDSA EEAARAYDAA AILMSGRNAK  60
TNFPTTTQTS SSTTPKTSTI KDSSSTPNDL SDILRAKLRK CSNVLSPSLT CLRLDNESSH  120
IGVWQKRAGQ RSDHSNWVMT VQLGKKNIKA DDGTTNQQSV SSPSMFSESP ASSSLEKPKL  180
IADAYEMTEE ERISLQMIEE LLNRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.13e-49ERF family protein