PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0089101
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 527aa    MW: 60121.2 Da    PI: 5.5121
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0089101genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-0687107526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C f++  G C+ GdrC+F H+
  RcHm_v2.0_Chr2g0089101  87 PCYFYLN-GMCNKGDRCSFLHD 107
                             5776666.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    
MEEQDLLNRN TDCVHFMASP PACDKGLECE FRHSKMARLN PKVCWYWLAG ECFNPTCAFR  60
HPPLEGHEAA PSETTPSSIS ANKSNIPCYF YLNGMCNKGD RCSFLHDADG SASTGKCSNT  120
ASACTEALPS ENKASTVNET VSAPTVAHQN PLETAAKATV DAIFQPKQDL DYREQLQKSA  180
SPHVSEYGDE EADEIRSNSL LLPAEASIHS KSPLFTDQSS EEGADDLIVQ EEWWESSPGF  240
DVLVDGKSEE DSPEYFPTLD GEHWELNKEW HDYDNPDEYD PQHPGAELLH ENQIYDSYDC  300
LDTRYLFGNE RSIHGYAEDR MLDSILSRKR KLMPLEVAVD DQDGLDLRNH LRRRRVIDDY  360
SSSGLSRMHE SIQLIGRSQE WPQRHDTGWQ RRLASEVENR TFESRRENES FNNAGIERRP  420
HRHTQHYRSR KHQERRLAKP EVPSSGFSRR PIPRDKRSSI EDSTVFTGPK SLAQIKEEKM  480
KAEENGRGIR KSRCVQRTRD DFQGPKPFTE ILKEKRKLAD RSGSGSN