PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0089141
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 337aa    MW: 38141.7 Da    PI: 7.1871
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0089141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH309.1e-1087111126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             ykt+lC +f   G C+ G++C++aHg
  RcHm_v2.0_Chr2g0089141  87 YKTRLCANFKN-GSCRNGENCNYAHG 111
                             9**********.*************8 PP
2zf-CCCH28.82.1e-09149171325
                             S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                             ++lC+ f  + +C+yGdrC+F H
  RcHm_v2.0_Chr2g0089141 149 MKLCKKFNNGEECPYGDRCNFLH 171
                             689******66************ PP
3zf-CCCH42.79.3e-14229255127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +kt++C+ + +tG C++G++C+FaHg+
  RcHm_v2.0_Chr2g0089141 229 WKTKICNKWEQTGKCPFGEKCHFAHGQ 255
                             8************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MNFSDQTSFM PVQSLYVGGS DAVNCWPPFP MNNEDHHSQF EQQAPPFKRP RNSEEPQSNP  60
MPYPPMNNSR LHPPNAPVNR GANNIFYKTR LCANFKNGSC RNGENCNYAH GIEDIRQPPP  120
NWQELVTVRD EDRPLTGNWE DDQKIIHRMK LCKKFNNGEE CPYGDRCNFL HEEPAKFRED  180
SGRYRENAAI SIGTTGAPMT QVSSTNHSED NRPVNTGMDA FRVNMKPYWK TKICNKWEQT  240
GKCPFGEKCH FAHGQAELQV PGVRVEAEVM TSAPISTKPQ TVPANDPSTI AMAAIPAAVN  300
EEVQGKKCGF KWRGSKKINQ INRIYGDWLD DVPLVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-94C3H family protein