PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0090441
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 362aa    MW: 40611.2 Da    PI: 6.5322
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0090441genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.3e-34381302103
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             F++k+y++++d+ +++li w + +nsf+v+++ ef++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +
  RcHm_v2.0_Chr2g0090441  38 FVMKTYQMVSDPITDRLIAWGRANNSFIVVEPLEFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLR 115
                             9********************999*****************************************999.........********** PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkkse 103
                             g+++ll+++ r+k++
  RcHm_v2.0_Chr2g0090441 116 GQTHLLKNVVRRKHN 130
                             *********999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MMITNASHGG EQQHRRLVQN PRASEKPMED NGNVVAPFVM KTYQMVSDPI TDRLIAWGRA  60
NNSFIVVEPL EFSQRLLPAY FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EWFLRGQTHL  120
LKNVVRRKHN NNRAVLNTTT AYGKSEELDD EEIVTEIARL RQEQRSLEEE VENMSKRLEA  180
TERRPQQMMA FLHRVAEDPE ILPRLMLEKD RRLAEGLGDK KRRLVIASTS STSSSGMGAT  240
ASVKTEDEVD GAMGVISSPE TGFEMESFSR GSTSPEASTA QGWWSQKRVV GRNRSDKELY  300
GNSTGLATQS GHGNGNSSHS GYGFGPFGYS GNRSGSGEVG YFAELEESPP PPYPFSLLEG  360
GF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-73HSF family protein