PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0090591
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 137aa    MW: 15616.5 Da    PI: 7.4353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0090591genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00141336123
                            EEETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                            y C++Cg + s k +  +Hi+  H
  RcHm_v2.0_Chr2g0090591 13 YYCKYCGICRSKKTLIASHIQAqH 36
                            89******************9877 PP
2zf-C2H224.19.1e-085677223
                            EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                            +C+ Cg sF+ + +Lk+H+++H
  RcHm_v2.0_Chr2g0090591 56 TCEECGASFKKPAHLKQHMQSH 77
                            6*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MDERPIFRDI RRYYCKYCGI CRSKKTLIAS HIQAQHKDEM EMAKGHEEVV VEKSNTCEEC  60
GASFKKPAHL KQHMQSHSLE ESTCLRTKPF GSREALDPTK ELQNARGYGL EWTSTRGETS  120
CEAPSSDPQS RSGTFEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.23e-24C2H2 family protein