PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0091471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 255aa    MW: 27794.5 Da    PI: 4.6689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0091471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1763113155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  RcHm_v2.0_Chr2g0091471  63 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALTIKG 113
                             68*****998.**********854...59*********************98875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MTTDPSHSET TTTESTSFNS SSFSSSASPH SPGQNNPSPG DSNPNDEKRV SSKRARESSS  60
KHPVYRGVRM RAWGKWVSEI REPRKKNRIW LGTFSTPEMA ARAHDVAALT IKGDSAILNF  120
PALSGSLPRP DSNSPRDIQA AAAKAASMDP SPTPPPPPQP PSSSTLSQSS SSSSMADAGT  180
PEELGEIVEL PSLGTSYESA ESEFVFEDSV EGWLYPPQPW WQNGYFGEEY GYIRNYDMIM  240
APEPALCVED LLWQH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-56ERF family protein